Trichostatin is a lipid of Polyketides (PK) class. Trichostatin is associated with abnormalities such as Dentatorubral-Pallidoluysian Atrophy, PARAGANGLIOMAS 3, abnormal fragmented structure, Disintegration (morphologic abnormality) and Hyperostosis, Diffuse Idiopathic Skeletal. The involved functions are known as Acetylation, Cell Differentiation process, histone modification, Gene Silencing and Transcriptional Activation. Trichostatin often locates in CD41a, Hematopoietic System, Chromatin Structure, Blood and Endothelium. The associated genes with Trichostatin are SPI1 gene, CELL Gene, Chromatin, CXCR4 gene and DNMT1 gene. The related lipids are Butyrates, Promega, butyrate, Lipopolysaccharides and Steroids. The related experimental models are Knock-out, Mouse Model, Xenograft Model and Cancer Model.
To understand associated biological information of trichostatin A, we collected biological information of abnormalities, associated pathways, cellular/molecular locations, biological functions, related genes/proteins, lipids and common seen animal/experimental models with organized paragraphs from literatures.
trichostatin A is suspected in Infection, Morphologically altered structure, Ureteral obstruction, Photosensitization, Atherosclerosis, Hypertrophic Cardiomyopathy and other diseases in descending order of the highest number of associated sentences.
Disease | Cross reference | Weighted score | Related literature |
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We collected disease MeSH terms mapped to the references associated with trichostatin A
Lipid pathways are not clear in current pathway databases. We organized associated pathways with trichostatin A through full-text articles, including metabolic pathways or pathways of biological mechanisms.
Pathway name | Related literatures |
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Associated locations are in red color. Not associated locations are in black.
Location | Cross reference | Weighted score | Related literatures |
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Function | Cross reference | Weighted score | Related literatures |
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Lipid concept | Cross reference | Weighted score | Related literatures |
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Gene | Cross reference | Weighted score | Related literatures |
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Mouse Model are used in the study 'Regulation of minichromosome maintenance gene family by microRNA-1296 and genistein in prostate cancer.' (Majid S et al., 2010), Mouse Model are used in the study 'Reversal of hypermethylation and reactivation of p16INK4a, RARbeta, and MGMT genes by genistein and other isoflavones from soy.' (Fang MZ et al., 2005) and Mouse Model are used in the study 'Histone deacetylase 3 mediates allergic skin inflammation by regulating expression of MCP1 protein.' (Kim Y et al., 2012).
Xenograft Model are used in the study 'Histone deacetylase inhibitors induce growth arrest and differentiation in uveal melanoma.' (Landreville S et al., 2012), Xenograft Model are used in the study 'Extended treatment with physiologic concentrations of dietary phytochemicals results in altered gene expression, reduced growth, and apoptosis of cancer cells.' (Moiseeva EP et al., 2007) and Xenograft Model are used in the study 'Retinoic acid and the histone deacetylase inhibitor trichostatin a inhibit the proliferation of human renal cell carcinoma in a xenograft tumor model.' (Touma SE et al., 2005).
Cancer Model are used in the study 'Plasma pharmacokinetics and metabolism of the histone deacetylase inhibitor trichostatin a after intraperitoneal administration to mice.' (Sanderson L et al., 2004).
Model | Cross reference | Weighted score | Related literatures |
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Authors | Title | Published | Journal | PubMed Link |
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Sanchez del Pino MM et al. | Properties of the yeast nuclear histone deacetylase. | 1994 | Biochem. J. | pmid:7980438 |
Kimura M et al. | Dual modes of action of platelet-derived growth factor and its inhibition by trichostatin-A for DNA synthesis in primary cultured smooth muscle cells of rat aorta. | 1994 | Biol. Pharm. Bull. | pmid:8019505 |
Hoshikawa Y et al. | Trichostatin A induces morphological changes and gelsolin expression by inhibiting histone deacetylase in human carcinoma cell lines. | 1994 | Exp. Cell Res. | pmid:8082721 |
Kijima M et al. | Trapoxin, an antitumor cyclic tetrapeptide, is an irreversible inhibitor of mammalian histone deacetylase. | 1993 | J. Biol. Chem. | pmid:8226751 |
Taunton J et al. | A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p. | 1996 | Science | pmid:8602529 |
Van Lint C et al. | Transcriptional activation and chromatin remodeling of the HIV-1 promoter in response to histone acetylation. | 1996 | EMBO J. | pmid:8605881 |
Carmen AA et al. | HDA1 and HDA3 are components of a yeast histone deacetylase (HDA) complex. | 1996 | J. Biol. Chem. | pmid:8663039 |
Takahashi I et al. | Selective inhibition of IL-2 gene expression by trichostatin A, a potent inhibitor of mammalian histone deacetylase. | 1996 | J. Antibiot. | pmid:8682722 |
Van Lint C et al. | The expression of a small fraction of cellular genes is changed in response to histone hyperacetylation. | 1996 | Gene Expr. | pmid:8723390 |
Ogryzko VV et al. | Human fibroblast commitment to a senescence-like state in response to histone deacetylase inhibitors is cell cycle dependent. | 1996 | Mol. Cell. Biol. | pmid:8756678 |
Okabe M et al. | Competence effect of PDGF on Ki-67 antigen and DNA contents, and its inhibition by trichostatin-A and a butylydene phthalide BP-421 in primary smooth muscle cells of rat aorta by flow cytometry. | 1995 | Biol. Pharm. Bull. | pmid:8787785 |
Yamamoto I et al. | Histone hyperacetylation plays a role in augmentation of IL-4-induced IgE production in LPS-stimulated murine B-lymphocytes by sodium butyrate. | 1996 | J. Biochem. | pmid:8827437 |
Bartsch J et al. | Moderate increase in histone acetylation activates the mouse mammary tumor virus promoter and remodels its nucleosome structure. | 1996 | Proc. Natl. Acad. Sci. U.S.A. | pmid:8855250 |
Yoshida M | [Molecular targets of cell cycle inhibitors and their mode of action]. | 1996 | Tanpakushitsu Kakusan Koso | pmid:8890633 |
Lee E et al. | Involvement of histone hyperacetylation in triggering DNA fragmentation of rat thymocytes undergoing apoptosis. | 1996 | FEBS Lett. | pmid:8898091 |
Zhang J et al. | Basis for the loss of aryl hydrocarbon receptor gene expression in clones of a mouse hepatoma cell line. | 1996 | Mol. Pharmacol. | pmid:8967965 |
Huang N et al. | Inhibition of IL-8 gene expression in Caco-2 cells by compounds which induce histone hyperacetylation. | 1997 | Cytokine | pmid:9067093 |
Sano M and Kitajima S | Inhibition of the nerve growth factor-induced outgrowth of neurites by trichostatin A requires protein synthesis de novo in PC12D cells. | 1996 | Brain Res. | pmid:9117395 |
Nagy L et al. | Nuclear receptor repression mediated by a complex containing SMRT, mSin3A, and histone deacetylase. | 1997 | Cell | pmid:9150137 |
Garcia-Villalba P et al. | Histone acetylation influences thyroid hormone and retinoic acid-mediated gene expression. | 1997 | DNA Cell Biol. | pmid:9150429 |
Chen WY et al. | Reactivation of silenced, virally transduced genes by inhibitors of histone deacetylase. | 1997 | Proc. Natl. Acad. Sci. U.S.A. | pmid:9159154 |
Dion LD et al. | Amplification of recombinant adenoviral transgene products occurs by inhibition of histone deacetylase. | 1997 | Virology | pmid:9168882 |
Xu L et al. | Effect of the histone deacetylase inhibitor trichostatin A on the responsiveness of rat hepatocytes to dioxin. | 1997 | Biochem. Pharmacol. | pmid:9174108 |
Sommer A et al. | Cell growth inhibition by the Mad/Max complex through recruitment of histone deacetylase activity. | 1997 | Curr. Biol. | pmid:9197243 |
Stein P et al. | Stage-dependent redistributions of acetylated histones in nuclei of the early preimplantation mouse embryo. | 1997 | Mol. Reprod. Dev. | pmid:9211426 |
McBain JA et al. | Apoptotic death in adenocarcinoma cell lines induced by butyrate and other histone deacetylase inhibitors. | 1997 | Biochem. Pharmacol. | pmid:9214697 |
Jenster G et al. | Steroid receptor induction of gene transcription: a two-step model. | 1997 | Proc. Natl. Acad. Sci. U.S.A. | pmid:9223281 |
Chen ZJ and Pikaard CS | Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance. | 1997 | Genes Dev. | pmid:9284051 |
Medina V et al. | Induction of caspase-3 protease activity and apoptosis by butyrate and trichostatin A (inhibitors of histone deacetylase): dependence on protein synthesis and synergy with a mitochondrial/cytochrome c-dependent pathway. | 1997 | Cancer Res. | pmid:9288776 |
Ohno Y et al. | Macrophage inflammatory protein-2: chromosomal regulation in rat small intestinal epithelial cells. | 1997 | Proc. Natl. Acad. Sci. U.S.A. | pmid:9294201 |
Minucci S et al. | A histone deacetylase inhibitor potentiates retinoid receptor action in embryonal carcinoma cells. | 1997 | Proc. Natl. Acad. Sci. U.S.A. | pmid:9326603 |
Goldman MA | Executive decision: chromatin structure and gene regulation. | 1997 | Trends Genet. | pmid:9351338 |
Svensson K et al. | The paternal allele of the H19 gene is progressively silenced during early mouse development: the acetylation status of histones may be involved in the generation of variegated expression patterns. | 1998 | Development | pmid:9389664 |
Sowa Y et al. | Histone deacetylase inhibitor activates the WAF1/Cip1 gene promoter through the Sp1 sites. | 1997 | Biochem. Biophys. Res. Commun. | pmid:9405248 |
Sheridan PL et al. | Histone acetyltransferases regulate HIV-1 enhancer activity in vitro. | 1997 | Genes Dev. | pmid:9407026 |
Ekwall K et al. | Transient inhibition of histone deacetylation alters the structural and functional imprint at fission yeast centromeres. | 1997 | Cell | pmid:9428524 |
Wong J et al. | Distinct requirements for chromatin assembly in transcriptional repression by thyroid hormone receptor and histone deacetylase. | 1998 | EMBO J. | pmid:9430643 |
Llorente A et al. | Expression of mutant dynamin inhibits toxicity and transport of endocytosed ricin to the Golgi apparatus. | 1998 | J. Cell Biol. | pmid:9456316 |
Magnaghi-Jaulin L et al. | Retinoblastoma protein represses transcription by recruiting a histone deacetylase. | 1998 | Nature | pmid:9468140 |
Lin RJ et al. | Role of the histone deacetylase complex in acute promyelocytic leukaemia. | 1998 | Nature | pmid:9486654 |
Grignani F et al. | Fusion proteins of the retinoic acid receptor-alpha recruit histone deacetylase in promyelocytic leukaemia. | 1998 | Nature | pmid:9486655 |
Emiliani S et al. | Characterization of a human RPD3 ortholog, HDAC3. | 1998 | Proc. Natl. Acad. Sci. U.S.A. | pmid:9501169 |
Richon VM et al. | A class of hybrid polar inducers of transformed cell differentiation inhibits histone deacetylases. | 1998 | Proc. Natl. Acad. Sci. U.S.A. | pmid:9501205 |
Belyaev ND et al. | The acetylation patterns of histones H3 and H4 along Vicia faba chromosomes are different. | 1998 | Chromosome Res. | pmid:9510512 |
Komatsu Y and Hayashi H | Histone deacetylase inhibitors up-regulate the expression of cell surface MHC class-I molecules in B16/BL6 cells. | 1998 | J. Antibiot. | pmid:9531994 |
El Kharroubi A et al. | Transcriptional activation of the integrated chromatin-associated human immunodeficiency virus type 1 promoter. | 1998 | Mol. Cell. Biol. | pmid:9566873 |
Gray SG and Ekström TJ | Effects of cell density and trichostatin A on the expression of HDAC1 and p57Kip2 in Hep 3B cells. | 1998 | Biochem. Biophys. Res. Commun. | pmid:9571167 |
Koguchi Y et al. | Trichostatin A and herboxidiene up-regulate the gene expression of low density lipoprotein receptor. | 1997 | J. Antibiot. | pmid:9592573 |
Walia H et al. | Histone acetylation is required to maintain the unfolded nucleosome structure associated with transcribing DNA. | 1998 | J. Biol. Chem. | pmid:9603965 |
Nan X et al. | Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. | 1998 | Nature | pmid:9620804 |