Trichostatin is a lipid of Polyketides (PK) class. Trichostatin is associated with abnormalities such as Dentatorubral-Pallidoluysian Atrophy, PARAGANGLIOMAS 3, abnormal fragmented structure, Disintegration (morphologic abnormality) and Hyperostosis, Diffuse Idiopathic Skeletal. The involved functions are known as Acetylation, Cell Differentiation process, histone modification, Gene Silencing and Transcriptional Activation. Trichostatin often locates in CD41a, Hematopoietic System, Chromatin Structure, Blood and Endothelium. The associated genes with Trichostatin are SPI1 gene, CELL Gene, Chromatin, CXCR4 gene and DNMT1 gene. The related lipids are Butyrates, Promega, butyrate, Lipopolysaccharides and Steroids. The related experimental models are Knock-out, Mouse Model, Xenograft Model and Cancer Model.
To understand associated biological information of trichostatin A, we collected biological information of abnormalities, associated pathways, cellular/molecular locations, biological functions, related genes/proteins, lipids and common seen animal/experimental models with organized paragraphs from literatures.
trichostatin A is suspected in Infection, Morphologically altered structure, Ureteral obstruction, Photosensitization, Atherosclerosis, Hypertrophic Cardiomyopathy and other diseases in descending order of the highest number of associated sentences.
Disease | Cross reference | Weighted score | Related literature |
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We collected disease MeSH terms mapped to the references associated with trichostatin A
Lipid pathways are not clear in current pathway databases. We organized associated pathways with trichostatin A through full-text articles, including metabolic pathways or pathways of biological mechanisms.
Pathway name | Related literatures |
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Associated locations are in red color. Not associated locations are in black.
Location | Cross reference | Weighted score | Related literatures |
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Function | Cross reference | Weighted score | Related literatures |
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Lipid concept | Cross reference | Weighted score | Related literatures |
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Gene | Cross reference | Weighted score | Related literatures |
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Mouse Model are used in the study 'Regulation of minichromosome maintenance gene family by microRNA-1296 and genistein in prostate cancer.' (Majid S et al., 2010), Mouse Model are used in the study 'Reversal of hypermethylation and reactivation of p16INK4a, RARbeta, and MGMT genes by genistein and other isoflavones from soy.' (Fang MZ et al., 2005) and Mouse Model are used in the study 'Histone deacetylase 3 mediates allergic skin inflammation by regulating expression of MCP1 protein.' (Kim Y et al., 2012).
Xenograft Model are used in the study 'Histone deacetylase inhibitors induce growth arrest and differentiation in uveal melanoma.' (Landreville S et al., 2012), Xenograft Model are used in the study 'Extended treatment with physiologic concentrations of dietary phytochemicals results in altered gene expression, reduced growth, and apoptosis of cancer cells.' (Moiseeva EP et al., 2007) and Xenograft Model are used in the study 'Retinoic acid and the histone deacetylase inhibitor trichostatin a inhibit the proliferation of human renal cell carcinoma in a xenograft tumor model.' (Touma SE et al., 2005).
Cancer Model are used in the study 'Plasma pharmacokinetics and metabolism of the histone deacetylase inhibitor trichostatin a after intraperitoneal administration to mice.' (Sanderson L et al., 2004).
Model | Cross reference | Weighted score | Related literatures |
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Authors | Title | Published | Journal | PubMed Link |
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Ji Z et al. | Integrating genomics and proteomics data to predict drug effects using binary linear programming. | 2014 | PLoS ONE | pmid:25036040 |
Lv W et al. | Histone deacetylase 1 and 3 regulate the mesodermal lineage commitment of mouse embryonic stem cells. | 2014 | PLoS ONE | pmid:25412078 |
Lu HK et al. | Ex vivo response to histone deacetylase (HDAC) inhibitors of the HIV long terminal repeat (LTR) derived from HIV-infected patients on antiretroviral therapy. | 2014 | PLoS ONE | pmid:25409334 |
Yang W et al. | Effect of trichostatin A on gelsolin levels, proteolysis of amyloid precursor protein, and amyloid beta-protein load in the brain of transgenic mouse model of Alzheimer's disease. | 2014 | Curr Alzheimer Res | pmid:25387339 |
Ying H et al. | Pressure overload-induced cardiac hypertrophy response requires janus kinase 2-histone deacetylase 2 signaling. | 2014 | Int J Mol Sci | pmid:25380525 |
Nishida N et al. | Identification of epigenetically inactivated genes in human hepatocellular carcinoma by integrative analyses of methylation profiling and pharmacological unmasking. | 2014 | Dig Dis | pmid:25376292 |
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Helm D et al. | Ion mobility tandem mass spectrometry enhances performance of bottom-up proteomics. | 2014 | Mol. Cell Proteomics | pmid:25106551 |
Yoshida T et al. | Kruppel-like factor 4 protein regulates isoproterenol-induced cardiac hypertrophy by modulating myocardin expression and activity. | 2014 | J. Biol. Chem. | pmid:25100730 |
Dubois-Pot-Schneider H et al. | Inflammatory cytokines promote the retrodifferentiation of tumor-derived hepatocyte-like cells to progenitor cells. | 2014 | Hepatology | pmid:25098666 |
Wu TH et al. | Melatonin prevents neonatal dexamethasone induced programmed hypertension: histone deacetylase inhibition. | 2014 | J. Steroid Biochem. Mol. Biol. | pmid:25090636 |
Shi Q et al. | [Inhibitory effect of trichostatin A on HepG2 cell proliferation and the mechanisms]. | 2014 | Nan Fang Yi Ke Da Xue Xue Bao | pmid:25057056 |
Tsuji M et al. | Epigenetic regulation of resistance to emotional stress: possible involvement of 5-HT1A receptor-mediated histone acetylation. | 2014 | J. Pharmacol. Sci. | pmid:25048113 |
Huan YJ et al. | Epigenetic modification agents improve genomic methylation reprogramming in porcine cloned embryos. | 2014 | J. Reprod. Dev. | pmid:25047549 |
Sun G et al. | Insights into the lysine acetylproteome of human sperm. | 2014 | J Proteomics | pmid:25038526 |
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Bartling TR et al. | Redox-sensitive gene-regulatory events controlling aberrant matrix metalloproteinase-1 expression. | 2014 | Free Radic. Biol. Med. | pmid:24973648 |
Busbee PB et al. | Natural indoles, indole-3-carbinol and 3,3'-diindolymethane, inhibit T cell activation by staphylococcal enterotoxin B through epigenetic regulation involving HDAC expression. | 2014 | Toxicol. Appl. Pharmacol. | pmid:24200994 |
Poljak M et al. | Class I to III histone deacetylases differentially regulate inflammation-induced matrix metalloproteinase 9 expression in primary amnion cells. | 2014 | Reprod Sci | pmid:24429678 |
Shin HJ et al. | Histone deacetylase classes I and II regulate Kaposi's sarcoma-associated herpesvirus reactivation. | 2014 | J. Virol. | pmid:24227836 |
Unland R et al. | Epigenetic repression of the dopamine receptor D4 in pediatric tumors of the central nervous system. | 2014 | J. Neurooncol. | pmid:24264533 |
Sun DF et al. | Inhibition of mTOR signalling potentiates the effects of trichostatin A in human gastric cancer cell lines by promoting histone acetylation. | 2014 | Cell Biol. Int. | pmid:24030871 |
Smirnova L et al. | MicroRNA profiling as tool for in vitro developmental neurotoxicity testing: the case of sodium valproate. | 2014 | PLoS ONE | pmid:24896083 |
Guo W et al. | Aberrant methylation and decreased expression of the TGF-β/Smad target gene FBXO32 in esophageal squamous cell carcinoma. | 2014 | Cancer | pmid:24798237 |
Palii CG et al. | Trichostatin A enhances vascular repair by injected human endothelial progenitors through increasing the expression of TAL1-dependent genes. | 2014 | Cell Stem Cell | pmid:24792117 |
Soler E and Grosveld F | Targeting epigenetics to speed up repair. | 2014 | Cell Stem Cell | pmid:24792110 |
Poplutz MK et al. | Regulation of the Interleukin-6 gene expression during monocytic differentiation of HL-60 cells by chromatin remodeling and methylation. | 2014 | Immunobiology | pmid:24746556 |
Rafehi H et al. | Vascular histone deacetylation by pharmacological HDAC inhibition. | 2014 | Genome Res. | pmid:24732587 |
Hassan MK et al. | Histone deacetylase inhibitors sensitize lung cancer cells to hyperthermia: involvement of Ku70/SirT-1 in thermo-protection. | 2014 | PLoS ONE | pmid:24728004 |
Drela K et al. | Low oxygen atmosphere facilitates proliferation and maintains undifferentiated state of umbilical cord mesenchymal stem cells in an hypoxia inducible factor-dependent manner. | 2014 | Cytotherapy | pmid:24726658 |
Zhu XJ et al. | Novel tumor-suppressor gene epidermal growth factor-containing fibulin-like extracellular matrix protein 1 is epigenetically silenced and associated with invasion and metastasis in human gastric cancer. | 2014 | Mol Med Rep | pmid:24718752 |
Song BS et al. | Valproic acid enhances early development of bovine somatic cell nuclear transfer embryos by alleviating endoplasmic reticulum stress. | 2014 | Reprod. Fertil. Dev. | pmid:23506644 |
Bitman M et al. | Valproate activates ERK signaling pathway in primary human hepatocytes. | 2014 | Biomed Pap Med Fac Univ Palacky Olomouc Czech Repub | pmid:23073524 |
Zhu M et al. | Histone decacetylase inhibitors prevent mitochondrial fragmentation and elicit early neuroprotection against MPP+. | 2014 | CNS Neurosci Ther | pmid:24351065 |
Wei G et al. | [Functional analysis of Oct4 promoter in Xuhuai goat]. | 2014 | Yi Chuan | pmid:25143277 |
Xu S et al. | Cytostatic and apoptotic effects of DNMT and HDAC inhibitors in endometrial cancer cells. | 2014 | Curr. Pharm. Des. | pmid:23888960 |
Jin YX et al. | Histone deacetylase inhibitor trichostatin A affects porcine oocyte maturation in vitro. | 2014 | Reprod. Fertil. Dev. | pmid:23759302 |
Kizuka Y et al. | Epigenetic regulation of a brain-specific glycosyltransferase N-acetylglucosaminyltransferase-IX (GnT-IX) by specific chromatin modifiers. | 2014 | J. Biol. Chem. | pmid:24619417 |
Kumar P et al. | Histone deacetylase inhibitors modulate the transcriptional regulation of guanylyl cyclase/natriuretic peptide receptor-a gene: interactive roles of modified histones, histone acetyltransferase, p300, AND Sp1. | 2014 | J. Biol. Chem. | pmid:24451378 |
Sathe A et al. | MicroRNA let-7f: a novel regulator of innate immune response in human endocervical cells. | 2014 | Am. J. Reprod. Immunol. | pmid:24405266 |
Varol N et al. | The epigenetically regulated effects of Wnt antagonists on the expression of genes in the apoptosis pathway in human bladder cancer cell line (T24). | 2014 | DNA Cell Biol. | pmid:24665856 |
Wisnieski F et al. | Differential expression of histone deacetylase and acetyltransferase genes in gastric cancer and their modulation by trichostatin A. | 2014 | Tumour Biol. | pmid:24668547 |
Yan YE et al. | Prenatal nicotinic exposure suppresses fetal adrenal steroidogenesis via steroidogenic factor 1 (SF-1) deacetylation. | 2014 | Toxicol. Appl. Pharmacol. | pmid:24709674 |
Cherry KE et al. | Identification of Tf1 integration events in S. pombe under nonselective conditions. | 2014 | Gene | pmid:24680781 |
Yang J et al. | PTEN methylation involved in benzene-induced hematotoxicity. | 2014 | Exp. Mol. Pathol. | pmid:24680972 |
Karki P et al. | Yin Yang 1 is a repressor of glutamate transporter EAAT2, and it mediates manganese-induced decrease of EAAT2 expression in astrocytes. | 2014 | Mol. Cell. Biol. | pmid:24469401 |
Reeves ME et al. | Evidence that RASSF1C stimulation of lung cancer cell proliferation depends on IGFBP-5 and PIWIL1 expression levels. | 2014 | PLoS ONE | pmid:25007054 |
Mahmud N et al. | Differential effects of epigenetic modifiers on the expansion and maintenance of human cord blood stem/progenitor cells. | 2014 | Biol. Blood Marrow Transplant. | pmid:24374212 |
Holownia A et al. | Histone acetylation and arachidonic acid cytotoxicity in HepG2 cells overexpressing CYP2E1. | 2014 | Naunyn Schmiedebergs Arch. Pharmacol. | pmid:24287576 |
Green BB and Kerr DE | Epigenetic contribution to individual variation in response to lipopolysaccharide in bovine dermal fibroblasts. | 2014 | Vet. Immunol. Immunopathol. | pmid:24268632 |